The Future of Molecular Dynamics

Exercise: Advanced OpenMM Features

Exercise: Performing Analysis with MDTraj

Introduction to Molecular Dynamics Trajectory Analysis and Markov State Models (MSM)

Exercise: Heating and Constraining Particles to Simulate a Protein-Ligand System

Introduction to Running Simulations with OpenMM

Introduction to Molecular Dynamics Workflows and Tools

Introduction to Molecular Dynamics

Extracting Energies and Other Quantities from Simulations

Validation of OpenMM

Creating and Customizing Force Fields in OpenMM

Customizing Forces and Integrators with OpenMM

Exercise: The Basics of OpenMM Molecular Dynamics Simulations

Introduction to the OpenMM API

Introduction to Running Simulations with OpenMM

Exercises: Running Simulations with OpenMM

Introduction to the OpenMM API

Customizing Forces and Integrators with OpenMM

Using AMOEBA Polarizable Force Fields

Validation of OpenMM

Force Field Parameterization

Introduction to Markov State Models for Trajectory Analysis

Free Energy Calculations and OpenMM

Introduction to Running Simulations with OpenMM